Introduction

The Problem

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Why CellReel?

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Citing CellReel

If you are using CellReel in a scientific publication, please cite it with:

(...) using CellReel version X.X.X (available at
https://pypi.python.org/pypi/cellreel).

or in a bibliography

Paul Müller (2021), CellReel version X.X.X: Fluorescence and
refractive index Tomography [Software]. Available at
https://pypi.python.org/pypi/cellreel.

and replace X.X.X with the version of CellReel that you used.

Furthermore, several ideas implemented in CellReel have been described and published in scientific journals:

• The original paper that employed a prototype of CellReel for combined refractive index and fluorescence tomography [SCG+17].

• Phase retrieval from holographic images with a gaussian filter is implemented according to [SSM+15].

• Phase background image correction with a tilt fitted to a border of the image data was used in [SSM+15] and [SSM+16].

• Phase background image correction with a polynomial fitted to known background regions was introduced for DHM in [CCC+06] (in this reference the phase correction is applied to the hologram data before field reconstruction).